QTL Accession ID | AQBS011 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | DTMT |
Trait Name | days to maturity |
Published Symbol | dtm5.1 |
Trait Synonym(s) | |
Trait Category | Development |
Chromosome | 5 |
Comments | O. rufipogon-derived QTL. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 28,325,986-28,326,374 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell V20A/Oruf QTL 1998 | BNL6.32 | 5 | 114.5-114.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBS011 | 5 | 114.5 | 114.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG435 | RFLP | Oryza sativa | qtl_marker |
To | RG697 | RFLP | Oryza sativa | qtl_marker |
To | RM31 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000469) | Xiao-J-H et al., 1998 (IAGP) |
Plant Structure | (PO:0000003) | Xiao-J-H et al., 1998 (SM) |
Plant Growth and Development Stage | (PO:0007130) | Xiao-J-H et al., 1998 (SM) |
(PO:0007038) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007140) | Xiao-J-H et al., 1998 (SM) |
(GRO:0007045) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Xiao-J-H et al., 1998 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 28,325,986 | 28,326,374 | ~160K SNPs x 20 accessions (McNally 2... | 2 | Search for SNPs |
chr5 | 28,325,986 | 28,326,374 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr5 | 28,325,986 | 28,326,374 | Huang X, et al, Nat Genetics 2010 Nov... | 0 | |
chr5 | 28,325,986 | 28,326,374 | RiceDiversity 44K SNP assay, 34 trait... | 0 | |
chr5 | 28,325,986 | 28,326,374 | RiceDiversity 44K SNP assay, 34 trait... | 0 |