QTL Accession ID | AQBS004 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | DTHD | ||||
Trait Name | days to heading | ||||
Published Symbol | dth6.1 | ||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 6 | ||||
Comments | O. rufipogon-derived QTL. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 10,015,514-27,252,383 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell V20A/Oruf QTL 1998 | BNL6.32 | 6 | 31.7-31.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBS004 | 6 | 31.7 | 31.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG264 | RFLP | Oryza sativa | qtl_marker |
To | RM3 | SSR | Oryza sativa Indica Group | qtl_marker |
To | G1314 | RFLP | Oryza sativa | qtl_marker |
To | RZ667 | RFLP | Oryza sativa | qtl_marker |
To | RZ682 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000137) | Xiao-J-H et al., 1998 (IAGP) |
Plant Structure | (PO:0009049) | Xiao-J-H et al., 1998 (SM) |
Plant Growth and Development Stage | (PO:0007041) | Xiao-J-H et al., 1998 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007044) | Xiao-J-H et al., 1998 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Xiao-J-H et al., 1998 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 10,015,514 | 27,252,383 | ~160K SNPs x 20 accessions (McNally 2... | 8,942 | Search for SNPs |
chr6 | 10,015,514 | 27,252,383 | '1536 chip' - 1311 SNPs x 395 rice ac... | 51 | Search for SNPs |
chr6 | 10,015,514 | 27,252,383 | Huang X, et al, Nat Genetics 2010 Nov... | 37,111 | Search for SNPs |
chr6 | 10,015,514 | 27,252,383 | RiceDiversity 44K SNP assay, 34 trait... | 37,111 | Search for SNPs |
chr6 | 10,015,514 | 27,252,383 | RiceDiversity 44K SNP assay, 34 trait... | 1,649 | Search for SNPs |