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Oryza sativa QTL "AQBP003" (gel consistency)
| QTL Accession ID | AQBP003 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | GELCON |
| Trait Name | gel consistency |
| Published Symbol | qGC-2 |
| Trait Synonym(s) | GC |
| Trait Category | Quality |
| Chromosome | 2 |
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 11,750,492-17,485,139 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 2 | 139.3-149.5 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQBP003 | 2 | 139.3 | 149.5 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG171 | RFLP | Oryza sativa | qtl_marker |
| To | G243 | RFLP | Oryza sativa | qtl_marker |
| To | G93 | RFLP | Oryza sativa | qtl_marker |
| To | RM27 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000211) | He-P et al., 1999 (IAGP) |
| Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | He-P et al., 1999 (SM) |
Database Cross-References (1)
SNPs (9,107)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr2 | 11,750,492 | 17,485,139 | ~160K SNPs x 20 accessions (McNally 2... | 1,471 | Search for SNPs |
| chr2 | 11,750,492 | 17,485,139 | '1536 chip' - 1311 SNPs x 395 rice ac... | 8 | Search for SNPs |
| chr2 | 11,750,492 | 17,485,139 | Huang X, et al, Nat Genetics 2010 Nov... | 3,621 | Search for SNPs |
| chr2 | 11,750,492 | 17,485,139 | RiceDiversity 44K SNP assay, 34 trait... | 3,621 | Search for SNPs |
| chr2 | 11,750,492 | 17,485,139 | RiceDiversity 44K SNP assay, 34 trait... | 386 | Search for SNPs |
