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Oryza sativa QTL "AQBM007" (green plantlet differentiation frequency)
| QTL Accession ID | AQBM007 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | GRNPTLDFQ |
| Trait Name | green plantlet differentiation frequency |
| Published Symbol | gpd-9 |
| Trait Synonym(s) | GPD |
| Trait Category | Vigor |
| Chromosome | 9 |
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 7,222,547-19,427,299 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 9 | 69.8-96.7 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQBM007 | 9 | 69.8 | 96.7 |
Associated Markers (10)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | G103 | RFLP | Oryza sativa | qtl_marker |
| To | G1314 | RFLP | Oryza sativa | qtl_marker |
| To | RZ698 | RFLP | Oryza sativa | qtl_marker |
| To | RZ12 | RFLP | Oryza sativa | qtl_marker |
| To | G93 | RFLP | Oryza sativa | qtl_marker |
| To | G385 | RFLP | Oryza sativa | qtl_marker |
| To | RG409 | RFLP | Oryza sativa | qtl_marker |
| To | C356 | RFLP | Oryza sativa | qtl_marker |
| To | RM257 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM242 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000631) | He-P et al., 1998 (IAGP) He-P et al., 1998 (IAGP) |
| Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007266) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | He-P et al., 1998 (SM) He-P et al., 1998 (SM) |
Database Cross-References (2)
SNPs (62,113)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr9 | 7,222,547 | 19,427,299 | ~160K SNPs x 20 accessions (McNally 2... | 4,714 | Search for SNPs |
| chr9 | 7,222,547 | 19,427,299 | '1536 chip' - 1311 SNPs x 395 rice ac... | 59 | Search for SNPs |
| chr9 | 7,222,547 | 19,427,299 | Huang X, et al, Nat Genetics 2010 Nov... | 28,098 | Search for SNPs |
| chr9 | 7,222,547 | 19,427,299 | RiceDiversity 44K SNP assay, 34 trait... | 28,098 | Search for SNPs |
| chr9 | 7,222,547 | 19,427,299 | RiceDiversity 44K SNP assay, 34 trait... | 1,144 | Search for SNPs |
