QTL Accession ID | AQBM006 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | GRNPTLDFQ |
Trait Name | green plantlet differentiation frequency |
Published Symbol | gpd-1 |
Trait Synonym(s) | GPD |
Trait Category | Vigor |
Chromosome | 1 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 32,060,549-35,008,029 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 1 | 87.9-97.3 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBM006 | 1 | 87.9 | 97.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G370 | RFLP | Oryza sativa | qtl_marker |
To | RG197 | RFLP | Oryza sativa | qtl_marker |
To | RM212 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RG541 | RFLP | Oryza sativa | qtl_marker |
To | RZ444 | RFLP | Oryza sativa | qtl_marker |
To | G1085 | RFLP | Oryza sativa | qtl_marker |
To | G396 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000631) | He-P et al., 1998 (IAGP) He-P et al., 1998 (IAGP) |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007266) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | He-P et al., 1998 (SM) He-P et al., 1998 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 32,060,549 | 35,008,029 | ~160K SNPs x 20 accessions (McNally 2... | 2,339 | Search for SNPs |
chr1 | 32,060,549 | 35,008,029 | '1536 chip' - 1311 SNPs x 395 rice ac... | 14 | Search for SNPs |
chr1 | 32,060,549 | 35,008,029 | Huang X, et al, Nat Genetics 2010 Nov... | 6,214 | Search for SNPs |
chr1 | 32,060,549 | 35,008,029 | RiceDiversity 44K SNP assay, 34 trait... | 6,214 | Search for SNPs |
chr1 | 32,060,549 | 35,008,029 | RiceDiversity 44K SNP assay, 34 trait... | 471 | Search for SNPs |