QTL Accession ID | AQBM004 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CAIND |
Trait Name | callus induction |
Published Symbol | ci-10 |
Trait Synonym(s) |
CI callus induction frequency |
Trait Category | Vigor |
Chromosome | 10 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 10,565,913-11,716,296 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 10 | 32.6-41.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBM004 | 10 | 32.6 | 41.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G1084 | RFLP | Oryza sativa | qtl_marker |
To | RG257 | RFLP | Oryza sativa | qtl_marker |
To | G1125 | RFLP | Oryza sativa | qtl_marker |
To | G1082 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000428) | He-P et al., 1998 (IAGP) He-P et al., 1998 (IAGP) |
Plant Growth and Development Stage | (PO:0009012) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007175) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | He-P et al., 1998 (SM) He-P et al., 1998 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr10 | 10,565,913 | 11,716,296 | ~160K SNPs x 20 accessions (McNally 2... | 218 | Search for SNPs |
chr10 | 10,565,913 | 11,716,296 | '1536 chip' - 1311 SNPs x 395 rice ac... | 4 | Search for SNPs |
chr10 | 10,565,913 | 11,716,296 | Huang X, et al, Nat Genetics 2010 Nov... | 2,608 | Search for SNPs |
chr10 | 10,565,913 | 11,716,296 | RiceDiversity 44K SNP assay, 34 trait... | 2,608 | Search for SNPs |
chr10 | 10,565,913 | 11,716,296 | RiceDiversity 44K SNP assay, 34 trait... | 72 | Search for SNPs |