QTL Accession ID | AQBK021 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | DTHD | ||||
Trait Name | days to heading | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 12 | ||||
Comments | QTL was detected using interaction analysis, having the interaction with AQBK020. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 532,909-3,185,631 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IGCN ZYQ8/JX17 RI QTL 2001 | BNL6.32 | 12 | 65.8-65.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBK021 | 12 | 65.8 | 65.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM247 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RG574 | RFLP | Oryza sativa | qtl_marker |
To | G193 | RFLP | Oryza sativa | qtl_marker |
To | G124 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000137) | Li-J-Z et al., 1999 (IAGP) |
Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Li-J-Z et al., 1999 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr12 | 532,909 | 3,185,631 | ~160K SNPs x 20 accessions (McNally 2... | 1,035 | Search for SNPs |
chr12 | 532,909 | 3,185,631 | '1536 chip' - 1311 SNPs x 395 rice ac... | 6 | Search for SNPs |
chr12 | 532,909 | 3,185,631 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
chr12 | 532,909 | 3,185,631 | Huang X, et al, Nat Genetics 2010 Nov... | 5,958 | Search for SNPs |
chr12 | 532,909 | 3,185,631 | RiceDiversity 44K SNP assay, 34 trait... | 5,958 | Search for SNPs |
chr12 | 532,909 | 3,185,631 | RiceDiversity 44K SNP assay, 34 trait... | 189 | Search for SNPs |