QTL Accession ID | AQBJ023 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | PBRNB | ||||||
Trait Name | primary branch | ||||||
Published Symbol | qNRB-2-1 | ||||||
Trait Synonym(s) |
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Trait Category | Anatomy | ||||||
Chromosome | 2 | ||||||
Comments | QTL was detected using the experiment data of 1996. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 22,327,435-22,596,902 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JKU Aso/IR24 QTL 1996 | BNL6.32 | 2 | 55.9-63.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBJ023 | 2 | 55.9 | 63.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | XNpb67 | RFLP | Oryza sativa | qtl_marker |
To | C621 | RFLP | Oryza sativa | qtl_marker |
To | G45 | RFLP | Oryza sativa | qtl_marker |
To | C920 | RFLP | Oryza sativa | qtl_marker |
To | C796 | RFLP | Oryza sativa | qtl_marker |
To | G1314 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000547) | Sasahara-H et al., 1999 (IAGP) |
Plant Structure | (PO:0006321) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Sasahara-H et al., 1999 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 22,327,435 | 22,596,902 | ~160K SNPs x 20 accessions (McNally 2... | 111 | Search for SNPs |
chr2 | 22,327,435 | 22,596,902 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
chr2 | 22,327,435 | 22,596,902 | Huang X, et al, Nat Genetics 2010 Nov... | 209 | Search for SNPs |
chr2 | 22,327,435 | 22,596,902 | RiceDiversity 44K SNP assay, 34 trait... | 209 | Search for SNPs |
chr2 | 22,327,435 | 22,596,902 | RiceDiversity 44K SNP assay, 34 trait... | 24 | Search for SNPs |