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Oryza sativa QTL "AQBJ018" (primary branch)
| QTL Accession ID | AQBJ018 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | PBRNB | ||||||
| Trait Name | primary branch | ||||||
| Published Symbol | qNRB-6-1 | ||||||
| Trait Synonym(s) |
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| Trait Category | Anatomy | ||||||
| Chromosome | 6 | ||||||
| Comments | QTL was detected using the experiment data of 1995. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 26,161,226-26,162,401 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JKU Aso/IR24 QTL 1996 | BNL6.32 | 6 | 58.2-73.5 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQBJ018 | 6 | 58.2 | 73.5 |
Associated Markers (6)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | G1314 | RFLP | Oryza sativa | qtl_marker |
| To | C1677 | RFLP | Oryza sativa | qtl_marker |
| To | G12 | RFLP | Oryza sativa | qtl_marker |
| To | XNpb386 | RFLP | Oryza sativa | qtl_marker |
| To | G2028 | RFLP | Oryza sativa | qtl_marker |
| To | C259 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000547) | Sasahara-H et al., 1999 (IAGP) |
| Plant Structure | (PO:0006321) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Sasahara-H et al., 1999 (SM) |
Database Cross-References (1)
SNPs (11)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 26,161,226 | 26,162,401 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
| chr6 | 26,161,226 | 26,162,401 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr6 | 26,161,226 | 26,162,401 | Huang X, et al, Nat Genetics 2010 Nov... | 5 | Search for SNPs |
| chr6 | 26,161,226 | 26,162,401 | RiceDiversity 44K SNP assay, 34 trait... | 5 | Search for SNPs |
| chr6 | 26,161,226 | 26,162,401 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
