QTL Accession ID | AQBI005 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | PF |
Trait Name | pollen fertility |
Published Symbol | |
Trait Synonym(s) | POFRT |
Trait Category | Sterility or fertility |
Chromosome | 7 |
Comments | Pollen fertility was estimated as the percentage of pollen grains that could be stained with acetic carmine. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 20,345,771-29,661,429 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JKU Tai65/Oglab QTL 1998 | BNL6.32 | 7 | 53.7-103.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBI005 | 7 | 53.7 | 103.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C451 | RFLP | Oryza sativa | qtl_marker |
To | XNpb117 | RFLP | Oryza sativa | qtl_marker |
To | R1245 | RFLP | Oryza sativa | qtl_marker |
To | R1789 | RFLP | Oryza sativa | qtl_marker |
To | C213 | RFLP | Oryza sativa | qtl_marker |
To | R1440 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000421) | Doi-K et al., 1998 (IAGP) |
Plant Structure | (PO:0020091) | Doi-K et al., 1998 (SM) |
Plant Growth and Development Stage | (PO:0007016) | Doi-K et al., 1998 (SM) |
Growth Stage | (GRO:0007151) | Doi-K et al., 1998 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Doi-K et al., 1998 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr7 | 20,345,771 | 29,661,429 | ~160K SNPs x 20 accessions (McNally 2... | 2,968 | Search for SNPs |
chr7 | 20,345,771 | 29,661,429 | '1536 chip' - 1311 SNPs x 395 rice ac... | 46 | Search for SNPs |
chr7 | 20,345,771 | 29,661,429 | Huang X, et al, Nat Genetics 2010 Nov... | 21,132 | Search for SNPs |
chr7 | 20,345,771 | 29,661,429 | RiceDiversity 44K SNP assay, 34 trait... | 21,132 | Search for SNPs |
chr7 | 20,345,771 | 29,661,429 | RiceDiversity 44K SNP assay, 34 trait... | 908 | Search for SNPs |