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Oryza sativa QTL "AQBI004" (pollen fertility)
| QTL Accession ID | AQBI004 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | PF |
| Trait Name | pollen fertility |
| Published Symbol | |
| Trait Synonym(s) | POFRT |
| Trait Category | Sterility or fertility |
| Chromosome | 3 |
| Comments | Pollen fertility was estimated as the percentage of pollen grains that could be stained with acetic carmine. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 718,777-2,488,460 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JKU Tai65/Oglab QTL 1998 | BNL6.32 | 3 | 0-54.9 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQBI004 | 3 | 0 | 54.9 |
Associated Markers (6)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C515 | RFLP | Oryza sativa | qtl_marker |
| To | XNpb279 | RFLP | Oryza sativa | qtl_marker |
| To | R2247 | RFLP | Oryza sativa | qtl_marker |
| To | XNpb348 | RFLP | Oryza sativa | qtl_marker |
| To | XNpb238 | RFLP | Oryza sativa | qtl_marker |
| To | XNpb51 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000421) | Doi-K et al., 1998 (IAGP) |
| Plant Structure | (PO:0020091) | Doi-K et al., 1998 (SM) |
| Plant Growth and Development Stage | (PO:0007016) | Doi-K et al., 1998 (SM) |
| Growth Stage | (GRO:0007151) | Doi-K et al., 1998 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Doi-K et al., 1998 (SM) |
Database Cross-References (1)
SNPs (6,463)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 718,777 | 2,488,460 | ~160K SNPs x 20 accessions (McNally 2... | 1,008 | Search for SNPs |
| chr3 | 718,777 | 2,488,460 | '1536 chip' - 1311 SNPs x 395 rice ac... | 11 | Search for SNPs |
| chr3 | 718,777 | 2,488,460 | Huang X, et al, Nat Genetics 2010 Nov... | 2,599 | Search for SNPs |
| chr3 | 718,777 | 2,488,460 | RiceDiversity 44K SNP assay, 34 trait... | 2,599 | Search for SNPs |
| chr3 | 718,777 | 2,488,460 | RiceDiversity 44K SNP assay, 34 trait... | 246 | Search for SNPs |
