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Oryza sativa QTL "AQBI003" (days to heading)
| QTL Accession ID | AQBI003 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | DTHD | ||||
| Trait Name | days to heading | ||||
| Published Symbol | |||||
| Trait Synonym(s) |
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| Trait Category | Development | ||||
| Chromosome | 10 | ||||
| Comments | Heading date was recorded as the day when the first spikelet of the plant flowered. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 865,388-23,031,714 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JKU Tai65/Oglab QTL 1998 | BNL6.32 | 10 | 0-97.6 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQBI003 | 10 | 0 | 97.6 |
Associated Markers (7)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C701 | RFLP | Oryza sativa | qtl_marker |
| To | XNpb333 | RFLP | Oryza sativa | qtl_marker |
| To | R1629 | RFLP | Oryza sativa | qtl_marker |
| To | G37 | RFLP | Oryza sativa | qtl_marker |
| To | R1877 | RFLP | Oryza sativa | qtl_marker |
| To | C16 | RFLP | Oryza sativa | qtl_marker |
| To | C405 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000137) | Doi-K et al., 1998 (IAGP) |
| Plant Structure | (PO:0009049) | Doi-K et al., 1998 (SM) |
| Plant Growth and Development Stage | (PO:0007041) | Doi-K et al., 1998 (SM) |
| (PO:0007130) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007044) | Doi-K et al., 1998 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Doi-K et al., 1998 (SM) |
Database Cross-References (1)
SNPs (93,945)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr10 | 865,388 | 23,031,714 | ~160K SNPs x 20 accessions (McNally 2... | 7,030 | Search for SNPs |
| chr10 | 865,388 | 23,031,714 | '1536 chip' - 1311 SNPs x 395 rice ac... | 81 | Search for SNPs |
| chr10 | 865,388 | 23,031,714 | Huang X, et al, Nat Genetics 2010 Nov... | 42,586 | Search for SNPs |
| chr10 | 865,388 | 23,031,714 | RiceDiversity 44K SNP assay, 34 trait... | 42,586 | Search for SNPs |
| chr10 | 865,388 | 23,031,714 | RiceDiversity 44K SNP assay, 34 trait... | 1,662 | Search for SNPs |
