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Oryza sativa QTL "AQBH004" (male fertility restoration)
| QTL Accession ID | AQBH004 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | MALERF |
| Trait Name | male fertility restoration |
| Published Symbol | |
| Trait Synonym(s) | Male fertility restoration in F1 hybrids |
| Trait Category | Sterility or fertility |
| Chromosome | 10 |
| Comments | QTL related with fertility restoration of rice cytoplasmic male sterility of the wild abortive type was detected by PLABQTL method. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 1,948,274-11,716,296 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | TKU RD21A/IR24 B1F1 QTL 1998 | BNL6.32 | 10 | 47.5-64.7 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQBH004 | 10 | 47.5 | 64.7 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | R2309 | RFLP | Oryza sativa | qtl_marker |
| To | RG257 | RFLP | Oryza sativa | qtl_marker |
| To | R2946 | RFLP | Oryza sativa | qtl_marker |
| To | RZ811 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000308) | Tan-X-L et al., 1998 (IAGP) |
| Plant Structure | (PO:0009066) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007016) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007151) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Tan-X-L et al., 1998 (SM) |
Database Cross-References (1)
SNPs (45,846)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr10 | 1,948,274 | 11,716,296 | ~160K SNPs x 20 accessions (McNally 2... | 2,570 | Search for SNPs |
| chr10 | 1,948,274 | 11,716,296 | '1536 chip' - 1311 SNPs x 395 rice ac... | 35 | Search for SNPs |
| chr10 | 1,948,274 | 11,716,296 | Huang X, et al, Nat Genetics 2010 Nov... | 21,304 | Search for SNPs |
| chr10 | 1,948,274 | 11,716,296 | RiceDiversity 44K SNP assay, 34 trait... | 21,304 | Search for SNPs |
| chr10 | 1,948,274 | 11,716,296 | RiceDiversity 44K SNP assay, 34 trait... | 633 | Search for SNPs |
