QTL Accession ID | AQBE018 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
Trait Symbol | TINB | ||||||||||
Trait Name | tiller number | ||||||||||
Published Symbol | tn2-4 | ||||||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||||||
Chromosome | 2 | ||||||||||
Comments | Unconditional QTL was detected using tiller number data measured 50 days after transplanting. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 35,367,690-35,662,199 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 2 | 135.8-143.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBE018 | 2 | 135.8 | 143.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ123 | RFLP | Oryza sativa | qtl_marker |
To | RZ213 | RFLP | Oryza sativa | qtl_marker |
To | RG520 | RFLP | Oryza sativa | qtl_marker |
To | RG256 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000346) | Yan-J-Q et al., 1998 (IAGP) |
Plant Structure | (PO:0005001) | Yan-J-Q et al., 1998 (SM) |
Plant Growth and Development Stage | (PO:0007073) | Yan-J-Q et al., 1998 (SM) |
(PO:0007134) | Yan-J-Q et al., 1998 (SM) | |
Growth Stage | (GRO:0007049) | Yan-J-Q et al., 1998 (SM) |
(GRO:0007139) | Yan-J-Q et al., 1998 (SM) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yan-J-Q et al., 1998 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 35,367,690 | 35,662,199 | ~160K SNPs x 20 accessions (McNally 2... | 178 | Search for SNPs |
chr2 | 35,367,690 | 35,662,199 | '1536 chip' - 1311 SNPs x 395 rice ac... | 2 | Search for SNPs |
chr2 | 35,367,690 | 35,662,199 | Huang X, et al, Nat Genetics 2010 Nov... | 327 | Search for SNPs |
chr2 | 35,367,690 | 35,662,199 | RiceDiversity 44K SNP assay, 34 trait... | 327 | Search for SNPs |
chr2 | 35,367,690 | 35,662,199 | RiceDiversity 44K SNP assay, 34 trait... | 50 | Search for SNPs |