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Oryza sativa QTL "AQBC054" (panicle tiller ratio)
| QTL Accession ID | AQBC054 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | PNTIRO | ||||
| Trait Name | panicle tiller ratio | ||||
| Published Symbol | ppt7 | ||||
| Trait Synonym(s) |
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| Trait Category | Yield | ||||
| Chromosome | 7 | ||||
| Comments | QTL was detected by genotype x environment interaction effect using the percentage of productive tillers (PPT) in Hangzhou. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 4,051,890-6,779,821 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 7 | 11.4-62.4 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQBC054 | 7 | 11.4 | 62.4 |
Associated Markers (6)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG511 | RFLP | Oryza sativa | qtl_marker |
| To | RG773 | RFLP | Oryza sativa | qtl_marker |
| To | RZ488 | RFLP | Oryza sativa | qtl_marker |
| To | RG477 | RFLP | Oryza sativa | qtl_marker |
| To | RG769 | RFLP | Oryza sativa | qtl_marker |
| To | S2AS3A3 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (10)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000453) | Yan-J et al., 1999 (IAGP) |
| Plant Structure | (PO:0009049) | Yan-J et al., 1999 (SM) |
| (PO:0005001) | Yan-J et al., 1999 (SM) | |
| Plant Growth and Development Stage | (PO:0007130) | Yan-J et al., 1999 (SM) |
| (PO:0007073 ) | Yan-J et al., 1999 (SM) | |
| Growth Stage | (GRO:0007140) | Yan-J et al., 1999 (SM) |
| (GRO:0007049) | Yan-J et al., 1999 (SM) | |
| (GRO:0007044) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Yan-J et al., 1999 (SM) |
Database Cross-References (1)
SNPs (12,847)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr7 | 4,051,890 | 6,779,821 | ~160K SNPs x 20 accessions (McNally 2... | 529 | Search for SNPs |
| chr7 | 4,051,890 | 6,779,821 | '1536 chip' - 1311 SNPs x 395 rice ac... | 5 | Search for SNPs |
| chr7 | 4,051,890 | 6,779,821 | Huang X, et al, Nat Genetics 2010 Nov... | 6,077 | Search for SNPs |
| chr7 | 4,051,890 | 6,779,821 | RiceDiversity 44K SNP assay, 34 trait... | 6,077 | Search for SNPs |
| chr7 | 4,051,890 | 6,779,821 | RiceDiversity 44K SNP assay, 34 trait... | 159 | Search for SNPs |
