QTL Accession ID | AQBC046 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
Trait Symbol | TINB | ||||||||||
Trait Name | tiller number | ||||||||||
Published Symbol | mtn5 | ||||||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||||||
Chromosome | 5 | ||||||||||
Comments | QTL was detected by genotype x environment interaction effect using maximum tiller number (MTN) in Hainan. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 22,556,049-24,262,670 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 5 | 120.8-130.1 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQBC046 | 5 | 120.8 | 130.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ67 | RFLP | Oryza sativa | qtl_marker |
To | RZ70 | RFLP | Oryza sativa | qtl_marker |
To | CDO105 | RFLP | Avena sativa | qtl_marker |
To | RZ225 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000346) | Yan-J et al., 1999 (IAGP) |
Plant Structure | (PO:0005001) | Yan-J et al., 1999 (SM) |
Plant Growth and Development Stage | (PO:0007073) | Yan-J et al., 1999 (SM) |
Growth Stage | (GRO:0007049) | Yan-J et al., 1999 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yan-J et al., 1999 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 22,556,049 | 24,262,670 | ~160K SNPs x 20 accessions (McNally 2... | 1,249 | Search for SNPs |
chr5 | 22,556,049 | 24,262,670 | '1536 chip' - 1311 SNPs x 395 rice ac... | 7 | Search for SNPs |
chr5 | 22,556,049 | 24,262,670 | Huang X, et al, Nat Genetics 2010 Nov... | 2,935 | Search for SNPs |
chr5 | 22,556,049 | 24,262,670 | RiceDiversity 44K SNP assay, 34 trait... | 2,935 | Search for SNPs |
chr5 | 22,556,049 | 24,262,670 | RiceDiversity 44K SNP assay, 34 trait... | 224 | Search for SNPs |