Oryza sativa QTL "AQBC024" (panicle number)

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Oryza sativa QTL "AQBC024" (panicle number)

QTL Accession ID

AQBC024

Species

Oryza sativa (Rice) [ GR_tax:013681 ]

Trait Symbol

PNNB

Trait Name

panicle number

Published Symbol

pn1

Trait Synonym(s)

NOP	NP	PN	PnN
TP	number of effective tiller per plant	number of panicle	panicle number per plant
panicle number per tiller	seed setting tillers per plant	spike number

Trait Category

Yield

Chromosome

Comments

QTL was detected by genetic main effect using panicle number data measured at maturity in two locations (Hangzhou and Hainan).

Map Positions (2)

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 1

34,937,981-40,567,354 bp

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Details

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Oryza sativa (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

QTL

IRRI IR64/Azu DH QTL 2003

BNL6.32

129.1-150.1 cM

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QTL DB Map Position (1)

Name	Chromosome	Start	Stop
AQBC024	1	129.1	150.1

Associated Markers (4)

Direction	Name	Type	Species	Assoc. Type
To	RZ730	RFLP	Oryza sativa	qtl_marker
To	RZ801	RFLP	Oryza sativa	qtl_marker
To	RG690	RFLP	Oryza sativa	qtl_marker
To	RG810	RFLP	Oryza sativa	qtl_marker

Associated Genes (0)

Associated Ontologies (7)

Term Type	Term	Evidence
Trait Ontology	(TO:0000152)	Yan-J et al., 1999 (IAGP)
Plant Structure	(PO:0009049)	Yan-J et al., 1999 (SM)
Plant Growth and Development Stage	(PO:0007041)	Yan-J et al., 1999 (SM)
	(PO:0007130)	Gramene curators, 2007 (IC)
Growth Stage	(GRO:0007044)	Yan-J et al., 1999 (SM)
Environment	(EO:0007403)	Gramene curators, 2007 (IC)
Species Ontology	(GR_tax:013681)	Yan-J et al., 1999 (SM)

Database Cross-References (1)

Gramene Literature	Yan-J, Zhu-J, He-C, Benmoussa-M, Wu-P, "Molecular marker-assisted dissection of genotype X environment interaction for plant", Crop Science, 1999, vol. 39, pp. 538-544

SNPs (20,842)

Chr	Start	Stop	Exp	Num. SNP Positions
chr1	34,937,981	40,567,354	~160K SNPs x 20 accessions (McNally 2...	3,906	Search for SNPs
chr1	34,937,981	40,567,354	'1536 chip' - 1311 SNPs x 395 rice ac...	18	Search for SNPs
chr1	34,937,981	40,567,354	Huang X, et al, Nat Genetics 2010 Nov...	8,090	Search for SNPs
chr1	34,937,981	40,567,354	RiceDiversity 44K SNP assay, 34 trait...	8,090	Search for SNPs
chr1	34,937,981	40,567,354	RiceDiversity 44K SNP assay, 34 trait...	738	Search for SNPs