QTL Accession ID | AQBC018 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | PTHT | ||||
Trait Name | plant height | ||||
Published Symbol | ph4 | ||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||
Chromosome | 4 | ||||
Comments | QTL was detected by genetic main effect using plant height data measured at maturity in two locations (Hangzhou and Hainan). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 31,662,839-32,449,446 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 4 | 82.2-104.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBC018 | 4 | 82.2 | 104.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG163 | RFLP | Oryza sativa | qtl_marker |
To | b2 | RFLP | Hordeum vulgare | qtl_marker |
To | RG214 | RFLP | Oryza sativa | qtl_marker |
To | RZ590 | RFLP | Oryza sativa | qtl_marker |
To | RZ675 | RFLP | Oryza sativa | qtl_marker |
To | RG143 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000207) | Yan-J et al., 1999 (IAGP) |
Plant Structure | (PO:0009006) | Yan-J et al., 1999 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Yan-J et al., 1999 (SM) |
(PO:0007130) | Yan-J et al., 1999 (SM) | |
Growth Stage | (GRO:0007139) | Yan-J et al., 1999 (SM) |
(GRO:0007140) | Yan-J et al., 1999 (SM) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yan-J et al., 1999 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 31,662,839 | 32,449,446 | ~160K SNPs x 20 accessions (McNally 2... | 454 | Search for SNPs |
chr4 | 31,662,839 | 32,449,446 | '1536 chip' - 1311 SNPs x 395 rice ac... | 5 | Search for SNPs |
chr4 | 31,662,839 | 32,449,446 | Huang X, et al, Nat Genetics 2010 Nov... | 3,378 | Search for SNPs |
chr4 | 31,662,839 | 32,449,446 | RiceDiversity 44K SNP assay, 34 trait... | 3,378 | Search for SNPs |
chr4 | 31,662,839 | 32,449,446 | RiceDiversity 44K SNP assay, 34 trait... | 129 | Search for SNPs |