QTL Accession ID | AQBA005 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | BPHRS |
Trait Name | brown planthopper resistance |
Published Symbol | |
Trait Synonym(s) | BPH |
Trait Category | Biotic stress |
Chromosome | 4 |
Comments | Seedbox screening score from IRRI experiment was measured to evaluate resistance to the brown planthopper and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 33,663,984-34,698,383 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 4 | 108.3-111.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBA005 | 4 | 108.3 | 111.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG143 | RFLP | Oryza sativa | qtl_marker |
To | RG620 | RFLP | Oryza sativa | qtl_marker |
To | RZ590 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000424) | Alam-S-N et al., 1998 (IAGP) |
Plant Structure | (PO:0000003) | Alam-S-N et al., 1998 (SM) |
(PO:0009005) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007134) | Alam-S-N et al., 1998 (SM) |
Growth Stage | (GRO:0007139) | Alam-S-N et al., 1998 (SM) |
Environment | (EO:0007317) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Alam-S-N et al., 1998 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 33,663,984 | 34,698,383 | ~160K SNPs x 20 accessions (McNally 2... | 386 | Search for SNPs |
chr4 | 33,663,984 | 34,698,383 | '1536 chip' - 1311 SNPs x 395 rice ac... | 3 | Search for SNPs |
chr4 | 33,663,984 | 34,698,383 | Huang X, et al, Nat Genetics 2010 Nov... | 1,318 | Search for SNPs |
chr4 | 33,663,984 | 34,698,383 | RiceDiversity 44K SNP assay, 34 trait... | 1,318 | Search for SNPs |
chr4 | 33,663,984 | 34,698,383 | RiceDiversity 44K SNP assay, 34 trait... | 69 | Search for SNPs |