QTL Accession ID | AQBA003 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | BPHRS |
Trait Name | brown planthopper resistance |
Published Symbol | |
Trait Synonym(s) | BPH |
Trait Category | Biotic stress |
Chromosome | 8 |
Comments | Seedbox screening score from Central Luzon experiment was measured to evaluate resistance to the brown planthopper and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 27,822,512-27,825,271 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 8 | 106.6-121.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBA003 | 8 | 106.6 | 121.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | CDO99 | RFLP | Avena sativa | qtl_marker |
To | RG418 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000424) | Alam-S-N et al., 1998 (IAGP) |
Plant Structure | (PO:0000003) | Alam-S-N et al., 1998 (SM) |
(PO:0009005) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007134) | Alam-S-N et al., 1998 (SM) |
Growth Stage | (GRO:0007139) | Alam-S-N et al., 1998 (SM) |
Environment | (EO:0007317) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Alam-S-N et al., 1998 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr8 | 27,822,512 | 27,825,271 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
chr8 | 27,822,512 | 27,825,271 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr8 | 27,822,512 | 27,825,271 | Huang X, et al, Nat Genetics 2010 Nov... | 4 | Search for SNPs |
chr8 | 27,822,512 | 27,825,271 | RiceDiversity 44K SNP assay, 34 trait... | 4 | Search for SNPs |
chr8 | 27,822,512 | 27,825,271 | RiceDiversity 44K SNP assay, 34 trait... | 0 |