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Oryza sativa QTL "AQBA002" (brown planthopper resistance)
| QTL Accession ID | AQBA002 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | BPHRS |
| Trait Name | brown planthopper resistance |
| Published Symbol | |
| Trait Synonym(s) | BPH |
| Trait Category | Biotic stress |
| Chromosome | 6 |
| Comments | Seedbox screening score from Central Luzon experiment was measured to evaluate resistance to the brown planthopper and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 6,718,648-6,720,901 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 6 | 12.6-20.2 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQBA002 | 6 | 12.6 | 20.2 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ144 | RFLP | Oryza sativa | qtl_marker |
| To | RG213 | RFLP | Oryza sativa | qtl_marker |
| To | RG648 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000424) | Alam-S-N et al., 1998 (IAGP) |
| Plant Structure | (PO:0000003) | Alam-S-N et al., 1998 (SM) |
| (PO:0009005) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007134) | Alam-S-N et al., 1998 (SM) |
| Growth Stage | (GRO:0007139) | Alam-S-N et al., 1998 (SM) |
| Environment | (EO:0007317) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Alam-S-N et al., 1998 (SM) |
Database Cross-References (1)
SNPs (16)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 6,718,648 | 6,720,901 | ~160K SNPs x 20 accessions (McNally 2... | 5 | Search for SNPs |
| chr6 | 6,718,648 | 6,720,901 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr6 | 6,718,648 | 6,720,901 | Huang X, et al, Nat Genetics 2010 Nov... | 5 | Search for SNPs |
| chr6 | 6,718,648 | 6,720,901 | RiceDiversity 44K SNP assay, 34 trait... | 5 | Search for SNPs |
| chr6 | 6,718,648 | 6,720,901 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
