QTL Accession ID | AQB017 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SETBK |
Trait Name | setback |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Quality |
Chromosome | 6 |
Comments | Related with rice grain quality. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 30,796,455-30,889,486 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 6 | 143.7-149.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQB017 | 6 | 143.7 | 149.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM103 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM141 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | OSR21 | SSR | Oryza sativa | qtl_marker |
To | RG433 | RFLP | Oryza sativa | qtl_marker |
To | RM412 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000412) | Bao-J-S et al., 2002 (IAGP) |
Plant Structure | (PO:0009010) | Bao-J-S et al., 2002 (SM) |
Plant Growth and Development Stage | (PO:0007038 ) | Bao-J-S et al., 2002 (SM) |
Growth Stage | (GRO:0007045) | Bao-J-S et al., 2002 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Bao-J-S et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 30,796,455 | 30,889,486 | ~160K SNPs x 20 accessions (McNally 2... | 11 | Search for SNPs |
chr6 | 30,796,455 | 30,889,486 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
chr6 | 30,796,455 | 30,889,486 | Huang X, et al, Nat Genetics 2010 Nov... | 86 | Search for SNPs |
chr6 | 30,796,455 | 30,889,486 | RiceDiversity 44K SNP assay, 34 trait... | 86 | Search for SNPs |
chr6 | 30,796,455 | 30,889,486 | RiceDiversity 44K SNP assay, 34 trait... | 8 | Search for SNPs |