QTL Accession ID | AQB007 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CONVIS |
Trait Name | consistency viscosity |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Quality |
Chromosome | 5 |
Comments | Related with rice grain quality. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 2,091,276-3,876,475 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 5 | 31.4-52.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQB007 | 5 | 31.4 | 52.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG313 | RFLP | Oryza sativa | qtl_marker |
To | RM593 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM592 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RZ556 | RFLP | Oryza sativa | qtl_marker |
To | RM574 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM437 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RG403 | RFLP | Oryza sativa | qtl_marker |
To | RM13 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM267 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM289 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000376) | Bao-J-S et al., 2002 (IAGP) |
Plant Structure | (PO:0009010) | Bao-J-S et al., 2002 (SM) |
Plant Growth and Development Stage | (PO:0007038 ) | Bao-J-S et al., 2002 (SM) |
Growth Stage | (GRO:0007045) | Bao-J-S et al., 2002 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Bao-J-S et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 2,091,276 | 3,876,475 | ~160K SNPs x 20 accessions (McNally 2... | 967 | Search for SNPs |
chr5 | 2,091,276 | 3,876,475 | '1536 chip' - 1311 SNPs x 395 rice ac... | 7 | Search for SNPs |
chr5 | 2,091,276 | 3,876,475 | Huang X, et al, Nat Genetics 2010 Nov... | 2,401 | Search for SNPs |
chr5 | 2,091,276 | 3,876,475 | RiceDiversity 44K SNP assay, 34 trait... | 2,401 | Search for SNPs |
chr5 | 2,091,276 | 3,876,475 | RiceDiversity 44K SNP assay, 34 trait... | 225 | Search for SNPs |