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Oryza sativa QTL "AQB006" (consistency viscosity)
| QTL Accession ID | AQB006 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | CONVIS |
| Trait Name | consistency viscosity |
| Published Symbol | |
| Trait Synonym(s) | |
| Trait Category | Quality |
| Chromosome | 12 |
| Comments | Related with rice grain quality. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 8,826,555-14,450,887 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 12 | 49.5-49.5 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQB006 | 12 | 49.5 | 49.5 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM101 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM179 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RG341 | RFLP | Oryza sativa | qtl_marker |
| To | RM83 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM277 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000376) | Bao-J-S et al., 2002 (IAGP) |
| Plant Structure | (PO:0009010) | Bao-J-S et al., 2002 (SM) |
| Plant Growth and Development Stage | (PO:0007038 ) | Bao-J-S et al., 2002 (SM) |
| Growth Stage | (GRO:0007045) | Bao-J-S et al., 2002 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Bao-J-S et al., 2002 (SM) |
Database Cross-References (1)
SNPs (34,149)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr12 | 8,826,555 | 14,450,887 | ~160K SNPs x 20 accessions (McNally 2... | 1,584 | Search for SNPs |
| chr12 | 8,826,555 | 14,450,887 | '1536 chip' - 1311 SNPs x 395 rice ac... | 17 | Search for SNPs |
| chr12 | 8,826,555 | 14,450,887 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 633 | Search for SNPs |
| chr12 | 8,826,555 | 14,450,887 | Huang X, et al, Nat Genetics 2010 Nov... | 15,747 | Search for SNPs |
| chr12 | 8,826,555 | 14,450,887 | RiceDiversity 44K SNP assay, 34 trait... | 15,747 | Search for SNPs |
| chr12 | 8,826,555 | 14,450,887 | RiceDiversity 44K SNP assay, 34 trait... | 421 | Search for SNPs |
