QTL Accession ID | AQB002 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | BRKVIS |
Trait Name | breakdown viscosity |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Quality |
Chromosome | 1 |
Comments | Related with rice grain quality. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 40,565,651-41,541,798 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 1 | 188.7-194.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQB002 | 1 | 188.7 | 194.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG810 | RFLP | Oryza sativa | qtl_marker |
To | RM529 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RZ801 | RFLP | Oryza sativa | qtl_marker |
To | RM414 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RG331 | RFLP | Oryza sativa | qtl_marker |
To | RM14 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM104 | SSR | Oryza sativa | qtl_marker |
To | OSR23 | SSR | Oryza sativa | qtl_marker |
To | RM568 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000374) | Bao-J-S et al., 2002 (IAGP) |
Plant Structure | (PO:0009010) | Bao-J-S et al., 2002 (SM) |
Plant Growth and Development Stage | (PO:0007130) | Bao-J-S et al., 2002 (SM) |
(PO:0007038) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007140) | Bao-J-S et al., 2002 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Bao-J-S et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 40,565,651 | 41,541,798 | ~160K SNPs x 20 accessions (McNally 2... | 909 | Search for SNPs |
chr1 | 40,565,651 | 41,541,798 | '1536 chip' - 1311 SNPs x 395 rice ac... | 4 | Search for SNPs |
chr1 | 40,565,651 | 41,541,798 | Huang X, et al, Nat Genetics 2010 Nov... | 1,755 | Search for SNPs |
chr1 | 40,565,651 | 41,541,798 | RiceDiversity 44K SNP assay, 34 trait... | 1,755 | Search for SNPs |
chr1 | 40,565,651 | 41,541,798 | RiceDiversity 44K SNP assay, 34 trait... | 181 | Search for SNPs |