QTL Accession ID | AQB001 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | AMYCN | ||||
Trait Name | amylose content | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Quality | ||||
Chromosome | 7 | ||||
Comments | Related with rice grain quality. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 6,779,215-6,779,821 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 7 | 30.1-30.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQB001 | 7 | 30.1 | 30.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG477 | RFLP | Oryza sativa | qtl_marker |
To | RM125 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM501 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000196) | Bao-J-S et al., 2002 (IAGP) |
Plant Structure | (PO:0009010) | Bao-J-S et al., 2002 (SM) |
Plant Growth and Development Stage | (PO:0007038 ) | Bao-J-S et al., 2002 (SM) |
Growth Stage | (GRO:0007045) | Bao-J-S et al., 2002 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Bao-J-S et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr7 | 6,779,215 | 6,779,821 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
chr7 | 6,779,215 | 6,779,821 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr7 | 6,779,215 | 6,779,821 | Huang X, et al, Nat Genetics 2010 Nov... | 0 | |
chr7 | 6,779,215 | 6,779,821 | RiceDiversity 44K SNP assay, 34 trait... | 0 | |
chr7 | 6,779,215 | 6,779,821 | RiceDiversity 44K SNP assay, 34 trait... | 0 |