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Oryza sativa QTL "AQAZ002" (phosphorus uptake)
| QTL Accession ID | AQAZ002 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | PHOUP |
| Trait Name | phosphorus uptake |
| Published Symbol | Pup1 |
| Trait Synonym(s) | |
| Trait Category | Abiotic stress |
| Chromosome | 12 |
| Comments | Tiller number was measured and used as a reliable indirect estimate for P uptake under P deficiency. The QTL was mapped based on individual F3 plants (n=160). |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 13,101,084-15,120,848 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 12 | 51.8-55.1 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAZ002 | 12 | 51.8 | 55.1 |
Associated Markers (9)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | L363 | RFLP | Oryza sativa | qtl_marker |
| To | S14025 | RFLP | Oryza sativa | qtl_marker |
| To | L1087 | RFLP | Oryza sativa | qtl_marker |
| To | S13126S | RFLP | Oryza sativa | qtl_marker |
| To | CYC1_23A | RFLP | Oryza sativa | qtl_marker |
| To | C625 | RFLP | Oryza sativa | qtl_marker |
| To | S10043S | RFLP | Oryza sativa | qtl_marker |
| To | S13752 | RFLP | Oryza sativa | qtl_marker |
| To | Y6854R | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (11)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000511) | Wissuwa-M et al., 2002 (IAGP) |
| Plant Structure | (PO:0006343) | Wissuwa-M et al., 2002 (SM) |
| (PO:0000003) | Gramene curators, 2007 (IC) | |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007110) | Wissuwa-M et al., 2002 (SM) |
| (PO:0007038) | Wissuwa-M et al., 2002 (SM) | |
| (PO:0007033) | Gramene curators, 2007 (IC) | |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Wissuwa-M et al., 2002 (SM) |
| Environment | (EO:0007397) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Wissuwa-M et al., 2002 (SM) |
Database Cross-References (1)
SNPs (11,623)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr12 | 13,101,084 | 15,120,848 | ~160K SNPs x 20 accessions (McNally 2... | 646 | Search for SNPs |
| chr12 | 13,101,084 | 15,120,848 | '1536 chip' - 1311 SNPs x 395 rice ac... | 7 | Search for SNPs |
| chr12 | 13,101,084 | 15,120,848 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
| chr12 | 13,101,084 | 15,120,848 | Huang X, et al, Nat Genetics 2010 Nov... | 5,402 | Search for SNPs |
| chr12 | 13,101,084 | 15,120,848 | RiceDiversity 44K SNP assay, 34 trait... | 5,402 | Search for SNPs |
| chr12 | 13,101,084 | 15,120,848 | RiceDiversity 44K SNP assay, 34 trait... | 166 | Search for SNPs |
