QTL Accession ID | AQAZ001 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | PHOUP |
Trait Name | phosphorus uptake |
Published Symbol | Pup1 |
Trait Synonym(s) | |
Trait Category | Abiotic stress |
Chromosome | 12 |
Comments | Tiller number was measured and used as a reliable indirect estimate for P uptake under P deficiency. The QTL was mapped based on F2 derived families in F3 (n=50). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 13,101,084-15,120,848 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 12 | 51.8-55.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAZ001 | 12 | 51.8 | 55.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | L363 | RFLP | Oryza sativa | qtl_marker |
To | S14025 | RFLP | Oryza sativa | qtl_marker |
To | L1087 | RFLP | Oryza sativa | qtl_marker |
To | S13126S | RFLP | Oryza sativa | qtl_marker |
To | CYC1_23A | RFLP | Oryza sativa | qtl_marker |
To | C625 | RFLP | Oryza sativa | qtl_marker |
To | S10043S | RFLP | Oryza sativa | qtl_marker |
To | S13752 | RFLP | Oryza sativa | qtl_marker |
To | Y6854R | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000511) | Wissuwa-M et al., 2002 (IAGP) |
Plant Structure | (PO:0006343) | Wissuwa-M et al., 2002 (SM) |
(PO:0000003) | Gramene curators, 2007 (IC) | |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007110) | Wissuwa-M et al., 2002 (SM) |
(PO:0007038) | Wissuwa-M et al., 2002 (SM) | |
(PO:0007033) | Gramene curators, 2007 (IC) | |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Wissuwa-M et al., 2002 (SM) |
Environment | (EO:0007397) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Wissuwa-M et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr12 | 13,101,084 | 15,120,848 | ~160K SNPs x 20 accessions (McNally 2... | 646 | Search for SNPs |
chr12 | 13,101,084 | 15,120,848 | '1536 chip' - 1311 SNPs x 395 rice ac... | 7 | Search for SNPs |
chr12 | 13,101,084 | 15,120,848 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
chr12 | 13,101,084 | 15,120,848 | Huang X, et al, Nat Genetics 2010 Nov... | 5,402 | Search for SNPs |
chr12 | 13,101,084 | 15,120,848 | RiceDiversity 44K SNP assay, 34 trait... | 5,402 | Search for SNPs |
chr12 | 13,101,084 | 15,120,848 | RiceDiversity 44K SNP assay, 34 trait... | 166 | Search for SNPs |