![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
QTL Home |
Simple Search |
Power Search |
Help |
Tutorial |
FAQ
Oryza sativa QTL "AQAX019" (days to heading)
| QTL Accession ID | AQAX019 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | DTHD | ||||
| Trait Name | days to heading | ||||
| Published Symbol | |||||
| Trait Synonym(s) |
|
||||
| Trait Category | Development | ||||
| Chromosome | 8 | ||||
| Comments | The trait was measured from the experiment of 1998 and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 1,719,421-5,327,118 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | NIAS Sas/Hab BCIL QTL 2003 | BNL6.32 | 8 | 8.3-27.4 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAX019 | 8 | 8.3 | 27.4 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C277 | RFLP | Oryza sativa | qtl_marker |
| To | C1121 | RFLP | Oryza sativa | qtl_marker |
| To | G278 | RFLP | Oryza sativa | qtl_marker |
| To | C1107 | RFLP | Oryza sativa | qtl_marker |
| To | G104 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000137) | Nagata-K et al., 2002 (IAGP) |
| Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Nagata-K et al., 2002 (SM) |
Database Cross-References (1)
SNPs (15,968)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr8 | 1,719,421 | 5,327,118 | ~160K SNPs x 20 accessions (McNally 2... | 1,182 | Search for SNPs |
| chr8 | 1,719,421 | 5,327,118 | '1536 chip' - 1311 SNPs x 395 rice ac... | 13 | Search for SNPs |
| chr8 | 1,719,421 | 5,327,118 | Huang X, et al, Nat Genetics 2010 Nov... | 7,227 | Search for SNPs |
| chr8 | 1,719,421 | 5,327,118 | RiceDiversity 44K SNP assay, 34 trait... | 7,227 | Search for SNPs |
| chr8 | 1,719,421 | 5,327,118 | RiceDiversity 44K SNP assay, 34 trait... | 319 | Search for SNPs |
