QTL Accession ID | AQAX004 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CARBCN |
Trait Name | carbohydrate content |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Biochemical |
Chromosome | 5 |
Comments | Total amount of nonstructural carbohydrate (NSC) in leaf sheaths and culms per plant (nscp) from the experiment of 1998 was measured and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 17,573,668-20,151,060 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | NIAS Sas/Hab BCIL QTL 2003 | BNL6.32 | 5 | 27.2-31.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAX004 | 5 | 27.2 | 31.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G1458 | RFLP | Oryza sativa | qtl_marker |
To | C1268 | RFLP | Oryza sativa | qtl_marker |
To | R372 | RFLP | Oryza sativa | qtl_marker |
To | R1553 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000291) | Nagata-K et al., 2002 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Nagata-K et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 17,573,668 | 20,151,060 | ~160K SNPs x 20 accessions (McNally 2... | 1,322 | Search for SNPs |
chr5 | 17,573,668 | 20,151,060 | '1536 chip' - 1311 SNPs x 395 rice ac... | 9 | Search for SNPs |
chr5 | 17,573,668 | 20,151,060 | Huang X, et al, Nat Genetics 2010 Nov... | 5,151 | Search for SNPs |
chr5 | 17,573,668 | 20,151,060 | RiceDiversity 44K SNP assay, 34 trait... | 5,151 | Search for SNPs |
chr5 | 17,573,668 | 20,151,060 | RiceDiversity 44K SNP assay, 34 trait... | 256 | Search for SNPs |