QTL Accession ID | AQAW034 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | PBRNB | ||||||
Trait Name | primary branch | ||||||
Published Symbol | |||||||
Trait Synonym(s) |
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Trait Category | Anatomy | ||||||
Chromosome | 5 | ||||||
Comments | Number of primary rachis branches (rb1) from the experiment of 1999 was measured and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 17,573,668-17,905,398 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | NIAS Sas/Hab BCIL QTL 2003 | BNL6.32 | 5 | 26-27.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAW034 | 5 | 26 | 27.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R372 | RFLP | Oryza sativa | qtl_marker |
To | G1458 | RFLP | Oryza sativa | qtl_marker |
To | C119 | RFLP | Oryza sativa | qtl_marker |
To | C1268 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000547) | Nagata-K et al., 2002 (IAGP) |
Plant Structure | (PO:0006321) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Nagata-K et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 17,573,668 | 17,905,398 | ~160K SNPs x 20 accessions (McNally 2... | 155 | Search for SNPs |
chr5 | 17,573,668 | 17,905,398 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
chr5 | 17,573,668 | 17,905,398 | Huang X, et al, Nat Genetics 2010 Nov... | 138 | Search for SNPs |
chr5 | 17,573,668 | 17,905,398 | RiceDiversity 44K SNP assay, 34 trait... | 138 | Search for SNPs |
chr5 | 17,573,668 | 17,905,398 | RiceDiversity 44K SNP assay, 34 trait... | 29 | Search for SNPs |