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Oryza sativa QTL "AQAW016" (secondary branch)
| QTL Accession ID | AQAW016 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | SBRNB | ||||
| Trait Name | secondary branch | ||||
| Published Symbol | |||||
| Trait Synonym(s) |
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| Trait Category | Anatomy | ||||
| Chromosome | 1 | ||||
| Comments | Number of secondary rachis branches (rb2) from the experiment of 1998 was measured and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 4,753,787-10,491,821 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI Mil23/Aki RI QTL 2003 | BNL6.32 | 1 | 25.3-39.7 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAW016 | 1 | 25.3 | 39.7 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | R210 | RFLP | Oryza sativa | qtl_marker |
| To | G359 | RFLP | Oryza sativa | qtl_marker |
| To | XNpb90 | RFLP | Oryza sativa | qtl_marker |
| To | G107 | RFLP | Oryza sativa | qtl_marker |
| To | C955 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000557) | Nagata-K et al., 2002 (IAGP) |
| Plant Structure | (PO:0006322) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Nagata-K et al., 2002 (SM) |
Database Cross-References (1)
SNPs (28,259)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 4,753,787 | 10,491,821 | ~160K SNPs x 20 accessions (McNally 2... | 3,638 | Search for SNPs |
| chr1 | 4,753,787 | 10,491,821 | '1536 chip' - 1311 SNPs x 395 rice ac... | 22 | Search for SNPs |
| chr1 | 4,753,787 | 10,491,821 | Huang X, et al, Nat Genetics 2010 Nov... | 11,734 | Search for SNPs |
| chr1 | 4,753,787 | 10,491,821 | RiceDiversity 44K SNP assay, 34 trait... | 11,734 | Search for SNPs |
| chr1 | 4,753,787 | 10,491,821 | RiceDiversity 44K SNP assay, 34 trait... | 1,131 | Search for SNPs |
