QTL Accession ID | AQAW012 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | DMASS | ||||||
Trait Name | dry mass | ||||||
Published Symbol | |||||||
Trait Synonym(s) |
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Trait Category | Abiotic stress | ||||||
Chromosome | 2 | ||||||
Comments | Total dry weight (tdw) from the experiment of 1997 was measured and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 27,034,336-27,035,400 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Mil23/Aki RI QTL 2003 | BNL6.32 | 2 | 61.4-67.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAW012 | 2 | 61.4 | 67.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | XNpb199 | RFLP | Oryza sativa | qtl_marker |
To | G1314 | RFLP | Oryza sativa | qtl_marker |
To | G39 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000352) | Nagata-K et al., 2002 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Nagata-K et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 27,034,336 | 27,035,400 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr2 | 27,034,336 | 27,035,400 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr2 | 27,034,336 | 27,035,400 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
chr2 | 27,034,336 | 27,035,400 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
chr2 | 27,034,336 | 27,035,400 | RiceDiversity 44K SNP assay, 34 trait... | 0 |