Oryza sativa QTL "AQAV007" (cold tolerance)

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QTL Accession ID	AQAV007
Species	Oryza sativa (Rice) [ GR_tax:013681 ]
Trait Symbol	COLDTL
Trait Name	cold tolerance
Published Symbol	qCTB6
Trait Synonym(s)	ctol low temperature resistance
Trait Category	Abiotic stress
Chromosome	6
Comments	The percentage of undeveloped spikelet number to total spikelet number was measured to evaluate the cold tolerance and used for QTL analysis.

Map Positions (1)

Oryza sativa (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

QTL

BNL6.32

28.6-43.5 cM

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QTL DB Map Position (1)

Name	Chromosome	Start	Stop
AQAV007	6	28.6	43.5

Associated Markers (4)

Direction	Name	Type	Species	Assoc. Type
To	RM50	SSR	Oryza sativa Indica Group	qtl_marker
To	RM173	SSR	Oryza sativa Japonica Group	qtl_marker
To	RM253	SSR	Oryza sativa Indica Group	qtl_marker
To	RM3	SSR	Oryza sativa Indica Group	qtl_marker

Associated Genes (0)

Associated Ontologies (8)

Term Type	Term	Evidence
Trait Ontology	(TO:0000303)	Andaya-V-C et al., 2003 (IAGP)
Plant Structure	(PO:0000003)	Gramene curators, 2007 (IC)
	(PO:0009011)	Gramene curators, 2007 (IC)
Plant Growth and Development Stage	(PO:0007033)	Gramene curators, 2007 (IC)
	(PO:0009012)	Gramene curators, 2007 (IC)
Growth Stage	(GRO:0007001)	Gramene curators, 2007 (IC)
Environment	(EO:0007174)	Gramene curators, 2007 (IC)
Species Ontology	(GR_tax:013681)	Andaya-V-C et al., 2003 (SM)

Database Cross-References (1)

Gramene Literature	Andaya-V-C, Mackill-D-J, "QTLs conferring cold tolerance at the booting stage of rice using recombinant inbred lines from a japonica x indica cross", Theoretical and applied genetics, 2003, vol. 106, pp. 1084-1090

SNPs (0)