QTL Accession ID | AQAV002 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | COLDTL |
Trait Name | cold tolerance |
Published Symbol | qCTB9 |
Trait Synonym(s) |
ctol low temperature resistance |
Trait Category | Abiotic stress |
Chromosome | 9 |
Comments | The percentage of fully filled spikelet number to total spikelet number was measured to evaluate the cold tolerance and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 17,719,660-18,810,331 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | M202/IR50 UCD QTL 2003 | BNL6.32 | 9 | 36.3-41.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAV002 | 9 | 36.3 | 41.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM257 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM242 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM105 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM288 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000303) | Andaya-V-C et al., 2003 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007174) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Andaya-V-C et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr9 | 17,719,660 | 18,810,331 | ~160K SNPs x 20 accessions (McNally 2... | 624 | Search for SNPs |
chr9 | 17,719,660 | 18,810,331 | '1536 chip' - 1311 SNPs x 395 rice ac... | 5 | Search for SNPs |
chr9 | 17,719,660 | 18,810,331 | Huang X, et al, Nat Genetics 2010 Nov... | 2,013 | Search for SNPs |
chr9 | 17,719,660 | 18,810,331 | RiceDiversity 44K SNP assay, 34 trait... | 2,013 | Search for SNPs |
chr9 | 17,719,660 | 18,810,331 | RiceDiversity 44K SNP assay, 34 trait... | 135 | Search for SNPs |