QTL Accession ID | AQAU002 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | BPHRS |
Trait Name | brown planthopper resistance |
Published Symbol | |
Trait Synonym(s) | BPH |
Trait Category | Biotic stress |
Chromosome | 10 |
Comments | A mapping population of 98 BC1F9 lines derived from a backcross of Nipponbare/Kasalath//Nipponbare was used to detect QTLs for resistance to the brown planthopper (BPH). The QTL position was displayed on JRGP-RFLP map. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 21,402,080-23,031,714 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 10 | 72.5-83.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAU002 | 10 | 72.5 | 83.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C809 | RFLP | Oryza sativa | qtl_marker |
To | C797 | RFLP | Oryza sativa | qtl_marker |
To | E61768S | RFLP | Oryza sativa | qtl_marker |
To | L704 | RFLP | Oryza sativa | qtl_marker |
To | C239 | RFLP | Oryza sativa | qtl_marker |
To | C223 | RFLP | Oryza sativa | qtl_marker |
To | C371 | RFLP | Oryza sativa | qtl_marker |
To | F15 | RFLP | Oryza sativa | qtl_marker |
To | G127 | RFLP | Oryza sativa | qtl_marker |
To | C405 | RFLP | Oryza sativa | qtl_marker |
To | C16 | RFLP | Oryza sativa | qtl_marker |
To | S11131 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000424) | Su-C-C et al., 2002 (IAGP) |
Plant Structure | (PO:0009005) | Su-C-C et al., 2002 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Su-C-C et al., 2002 (SM) |
Growth Stage | (GRO:0007139) | Su-C-C et al., 2002 (SM) |
Environment | (EO:0007317) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Su-C-C et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr10 | 21,402,080 | 23,031,714 | ~160K SNPs x 20 accessions (McNally 2... | 612 | Search for SNPs |
chr10 | 21,402,080 | 23,031,714 | '1536 chip' - 1311 SNPs x 395 rice ac... | 7 | Search for SNPs |
chr10 | 21,402,080 | 23,031,714 | Huang X, et al, Nat Genetics 2010 Nov... | 2,747 | Search for SNPs |
chr10 | 21,402,080 | 23,031,714 | RiceDiversity 44K SNP assay, 34 trait... | 2,747 | Search for SNPs |
chr10 | 21,402,080 | 23,031,714 | RiceDiversity 44K SNP assay, 34 trait... | 146 | Search for SNPs |