Oryza sativa QTL "AQAS011" (root dry weight)

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Oryza sativa QTL "AQAS011" (root dry weight)

QTL Accession ID

AQAS011

Species

Oryza sativa (Rice) [ GR_tax:013681 ]

Trait Symbol

RTDWT

Trait Name

root dry weight

Published Symbol

Trait Synonym(s)

TRDW	deep root dry weight per plant
deep root dry weight per tiller	deep root mass
rdw/t	root dry weight per tiller
total root dry weight

Trait Category

Vigor

Chromosome

Comments

Root dry weight (RDW) measured on 85 DAS (days after sowing) under stress condition during wet season of 1996 was used for QTL analysis.

Map Positions (2)

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 3

3,524,119-3,526,420 bp

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Details

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Oryza sativa (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

QTL

IRRI IR64/Azu DH QTL 2003

BNL6.32

12.7-12.7 cM

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Details

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QTL DB Map Position (1)

Name	Chromosome	Start	Stop
AQAS011	3	12.7	12.7

Associated Markers (3)

Direction	Name	Type	Species	Assoc. Type
To	RZ329	RFLP	Oryza sativa	qtl_marker
To	RG348	RFLP	Oryza sativa	qtl_marker
To	RZ892	RFLP	Oryza sativa	qtl_marker

Associated Genes (0)

Associated Ontologies (8)

Term Type	Term	Evidence
Trait Ontology	(TO:0000078)	Venuprasad-R et al., 2002 (IAGP)
Plant Structure	(PO:0009005)	Venuprasad-R et al., 2002 (SM)
Plant Growth and Development Stage	(PO:0007134)	Venuprasad-R et al., 2002 (SM)
	(PO:0007130)	Venuprasad-R et al., 2002 (SM)
Growth Stage	(GRO:0007139)	Venuprasad-R et al., 2002 (SM)
	(GRO:0007140)	Venuprasad-R et al., 2002 (SM)
Environment	(EO:0007403)	Gramene curators, 2007 (IC)
Species Ontology	(GR_tax:013681)	Venuprasad-R et al., 2002 (SM)

Database Cross-References (1)

Gramene Literature	Venuprasad-R, Shashidhar-H-E, Hittalmani-S, Hemamalini-G-S, "Tagging quantitative trait loci associated with grain yield and root morphological traits in rice (Oryza sativa L.) under contrasting moisture regimes.", Euphytica, 2002, vol. 128, pp. 293-300

SNPs (32)

Chr	Start	Stop	Exp	Num. SNP Positions
chr3	3,524,119	3,526,420	~160K SNPs x 20 accessions (McNally 2...	0
chr3	3,524,119	3,526,420	'1536 chip' - 1311 SNPs x 395 rice ac...	0
chr3	3,524,119	3,526,420	Huang X, et al, Nat Genetics 2010 Nov...	16	Search for SNPs
chr3	3,524,119	3,526,420	RiceDiversity 44K SNP assay, 34 trait...	16	Search for SNPs
chr3	3,524,119	3,526,420	RiceDiversity 44K SNP assay, 34 trait...	0