QTL Accession ID | AQAS009 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | RTTH |
Trait Name | root thickness |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Anatomy |
Chromosome | 2 |
Comments | Root thickness (RTT) measured on 65 DAS (days after sowing) under nonstress condition during wet season of 1996 was used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 19,865,083-24,566,182 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 2 | 40.6-63.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAS009 | 2 | 40.6 | 63.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG157 | RFLP | Oryza sativa | qtl_marker |
To | RZ318 | RFLP | Oryza sativa | qtl_marker |
To | RG171 | RFLP | Oryza sativa | qtl_marker |
To | RZ58 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000306) | Venuprasad-R et al., 2002 (IAGP) |
Plant Structure | (PO:0009005) | Venuprasad-R et al., 2002 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Venuprasad-R et al., 2002 (SM) |
(PO:0007130) | Venuprasad-R et al., 2002 (SM) | |
Growth Stage | (GRO:0007139) | Venuprasad-R et al., 2002 (SM) |
(GRO:0007140) | Venuprasad-R et al., 2002 (SM) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Venuprasad-R et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 19,865,083 | 24,566,182 | ~160K SNPs x 20 accessions (McNally 2... | 2,639 | Search for SNPs |
chr2 | 19,865,083 | 24,566,182 | '1536 chip' - 1311 SNPs x 395 rice ac... | 19 | Search for SNPs |
chr2 | 19,865,083 | 24,566,182 | Huang X, et al, Nat Genetics 2010 Nov... | 13,534 | Search for SNPs |
chr2 | 19,865,083 | 24,566,182 | RiceDiversity 44K SNP assay, 34 trait... | 13,534 | Search for SNPs |
chr2 | 19,865,083 | 24,566,182 | RiceDiversity 44K SNP assay, 34 trait... | 564 | Search for SNPs |