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Oryza sativa QTL "AQAS008" (harvest index)
| QTL Accession ID | AQAS008 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | HVID | ||||||
| Trait Name | harvest index | ||||||
| Published Symbol | |||||||
| Trait Synonym(s) |
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| Trait Category | Yield | ||||||
| Chromosome | 3 | ||||||
| Comments | Average value of harvest index (HI) over both experiments (nonstress condition during the wet season of 1998 and stress condition during the dry season of 1999) was computed and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 3,524,119-3,526,420 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 3 | 12.7-15.5 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAS008 | 3 | 12.7 | 15.5 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ329 | RFLP | Oryza sativa | qtl_marker |
| To | RZ892 | RFLP | Oryza sativa | qtl_marker |
| To | RG348 | RFLP | Oryza sativa | qtl_marker |
| To | RG100 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (11)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000128) | Venuprasad-R et al., 2002 (IAGP) |
| Plant Structure | (PO:0009001) | Venuprasad-R et al., 2002 (SM) |
| (PO:0009006) | Gramene curators, 2007 (IC) | |
| (PO:0009010) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007134) | Venuprasad-R et al., 2002 (SM) |
| (PO:0007130) | Venuprasad-R et al., 2002 (SM) | |
| (PO:0007038) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Venuprasad-R et al., 2002 (SM) |
| (GRO:0007140) | Venuprasad-R et al., 2002 (SM) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Venuprasad-R et al., 2002 (SM) |
Database Cross-References (1)
SNPs (32)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 3,524,119 | 3,526,420 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr3 | 3,524,119 | 3,526,420 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr3 | 3,524,119 | 3,526,420 | Huang X, et al, Nat Genetics 2010 Nov... | 16 | Search for SNPs |
| chr3 | 3,524,119 | 3,526,420 | RiceDiversity 44K SNP assay, 34 trait... | 16 | Search for SNPs |
| chr3 | 3,524,119 | 3,526,420 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
