![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
QTL Home |
Simple Search |
Power Search |
Help |
Tutorial |
FAQ
Oryza sativa QTL "AQAS007" (days to maturity)
| QTL Accession ID | AQAS007 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | DTMT |
| Trait Name | days to maturity |
| Published Symbol | |
| Trait Synonym(s) | |
| Trait Category | Development |
| Chromosome | 3 |
| Comments | Average value of days to maturity (DAM) over both experiments (nonstress condition during the wet season of 1998 and stress condition during the dry season of 1999) was computed and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 484,860-1,450,227 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 3 | 0-4.4 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAS007 | 3 | 0 | 4.4 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG104 | RFLP | Oryza sativa | qtl_marker |
| To | RG348 | RFLP | Oryza sativa | qtl_marker |
| To | RZ329 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (10)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000469) | Venuprasad-R et al., 2002 (IAGP) |
| Plant Structure | (PO:0000003) | Venuprasad-R et al., 2002 (SM) |
| Plant Growth and Development Stage | (PO:0007134) | Venuprasad-R et al., 2002 (SM) |
| (PO:0007130) | Venuprasad-R et al., 2002 (SM) | |
| (PO:0007038) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Venuprasad-R et al., 2002 (SM) |
| (GRO:0007140) | Venuprasad-R et al., 2002 (SM) | |
| (GRO:0007045) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Venuprasad-R et al., 2002 (SM) |
Database Cross-References (1)
SNPs (1,882)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 484,860 | 1,450,227 | ~160K SNPs x 20 accessions (McNally 2... | 631 | Search for SNPs |
| chr3 | 484,860 | 1,450,227 | '1536 chip' - 1311 SNPs x 395 rice ac... | 5 | Search for SNPs |
| chr3 | 484,860 | 1,450,227 | Huang X, et al, Nat Genetics 2010 Nov... | 550 | Search for SNPs |
| chr3 | 484,860 | 1,450,227 | RiceDiversity 44K SNP assay, 34 trait... | 550 | Search for SNPs |
| chr3 | 484,860 | 1,450,227 | RiceDiversity 44K SNP assay, 34 trait... | 146 | Search for SNPs |
