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Oryza sativa QTL "AQAS004" (harvest index)
| QTL Accession ID | AQAS004 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | HVID | ||||||
| Trait Name | harvest index | ||||||
| Published Symbol | |||||||
| Trait Synonym(s) |
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| Trait Category | Yield | ||||||
| Chromosome | 3 | ||||||
| Comments | Harvest index (HI) under nonstress condition during wet season of 1998 was measured and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 3,524,119-3,526,420 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 3 | 12.7-15.5 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAS004 | 3 | 12.7 | 15.5 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ329 | RFLP | Oryza sativa | qtl_marker |
| To | RZ892 | RFLP | Oryza sativa | qtl_marker |
| To | RG348 | RFLP | Oryza sativa | qtl_marker |
| To | RG100 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (11)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000128) | Venuprasad-R et al., 2002 (IAGP) |
| Plant Structure | (PO:0000003) | Venuprasad-R et al., 2002 (SM) |
| (PO:0009006) | Gramene curators, 2007 (IC) | |
| (PO:0009010) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007134) | Venuprasad-R et al., 2002 (SM) |
| (PO:0007130) | Venuprasad-R et al., 2002 (SM) | |
| (PO:0007038) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Venuprasad-R et al., 2002 (SM) |
| (GRO:0007140) | Venuprasad-R et al., 2002 (SM) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Venuprasad-R et al., 2002 (SM) |
Database Cross-References (1)
SNPs (32)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 3,524,119 | 3,526,420 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr3 | 3,524,119 | 3,526,420 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr3 | 3,524,119 | 3,526,420 | Huang X, et al, Nat Genetics 2010 Nov... | 16 | Search for SNPs |
| chr3 | 3,524,119 | 3,526,420 | RiceDiversity 44K SNP assay, 34 trait... | 16 | Search for SNPs |
| chr3 | 3,524,119 | 3,526,420 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
