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Oryza sativa QTL "AQAS001" (days to flower)
| QTL Accession ID | AQAS001 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | DTFL | ||||||
| Trait Name | days to flower | ||||||
| Published Symbol | |||||||
| Trait Synonym(s) |
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| Trait Category | Development | ||||||
| Chromosome | 3 | ||||||
| Comments | Days to flowering (DFL) under nonstress condition during wet season of 1998 was measured and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 484,860-1,450,227 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 3 | 0-4.4 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAS001 | 3 | 0 | 4.4 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG104 | RFLP | Oryza sativa | qtl_marker |
| To | RG348 | RFLP | Oryza sativa | qtl_marker |
| To | RZ329 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (9)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000344) | Venuprasad-R et al., 2002 (IAGP) |
| Plant Structure | (PO:0009046) | Venuprasad-R et al., 2002 (SM) |
| Plant Growth and Development Stage | (PO:0007134) | Venuprasad-R et al., 2002 (SM) |
| (PO:0007130) | Venuprasad-R et al., 2002 (SM) | |
| (PO:0007016) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Venuprasad-R et al., 2002 (SM) |
| (GRO:0007140) | Venuprasad-R et al., 2002 (SM) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Venuprasad-R et al., 2002 (SM) |
Database Cross-References (1)
SNPs (1,882)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 484,860 | 1,450,227 | ~160K SNPs x 20 accessions (McNally 2... | 631 | Search for SNPs |
| chr3 | 484,860 | 1,450,227 | '1536 chip' - 1311 SNPs x 395 rice ac... | 5 | Search for SNPs |
| chr3 | 484,860 | 1,450,227 | Huang X, et al, Nat Genetics 2010 Nov... | 550 | Search for SNPs |
| chr3 | 484,860 | 1,450,227 | RiceDiversity 44K SNP assay, 34 trait... | 550 | Search for SNPs |
| chr3 | 484,860 | 1,450,227 | RiceDiversity 44K SNP assay, 34 trait... | 146 | Search for SNPs |
