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Oryza sativa QTL "AQAN002" (drought tolerance)
| QTL Accession ID | AQAN002 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | DRTL |
| Trait Name | drought tolerance |
| Published Symbol | qDT-12 |
| Trait Synonym(s) | drought resistance |
| Trait Category | Abiotic stress |
| Chromosome | 12 |
| Comments | This locus were found interacting with another locus, AQAN006. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 19,628,443-19,628,925 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 12 | 69.1-93.6 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAN002 | 12 | 69.1 | 93.6 |
Associated Markers (6)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG457 | RFLP | Oryza sativa | qtl_marker |
| To | G1184 | RFLP | Oryza sativa | qtl_marker |
| To | RG361 | RFLP | Oryza sativa | qtl_marker |
| To | Y12817R | RFLP | Oryza sativa | qtl_marker |
| To | G2140 | RFLP | Oryza sativa | qtl_marker |
| To | G1391 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000276) | Teng-S et al., 2002 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007404) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Teng-S et al., 2002 (SM) |
Database Cross-References (1)
SNPs (4)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr12 | 19,628,443 | 19,628,925 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr12 | 19,628,443 | 19,628,925 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr12 | 19,628,443 | 19,628,925 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
| chr12 | 19,628,443 | 19,628,925 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
| chr12 | 19,628,443 | 19,628,925 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
| chr12 | 19,628,443 | 19,628,925 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
