QTL Accession ID | AQAL046 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | DRTSHRO |
Trait Name | deep root to shoot ratio |
Published Symbol | |
Trait Synonym(s) | deep root ratio |
Trait Category | Abiotic stress |
Chromosome | 2 |
Comments | One non-main effect epistasis QTL; having the interaction with AQAL047. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 20,878,430-20,880,467 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | TTU IR58821/IR52561 QTL 2002 | BNL6.32 | 2 | 129.6-129.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAL046 | 2 | 129.6 | 129.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C499 | RFLP | Oryza sativa | qtl_marker |
To | RZ386 | RFLP | Oryza sativa | qtl_marker |
To | RG188 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000092) | Kamoshita-A et al., 2002 (IAGP) |
Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
(PO:0009006) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Kamoshita-A et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 20,878,430 | 20,880,467 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr2 | 20,878,430 | 20,880,467 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr2 | 20,878,430 | 20,880,467 | Huang X, et al, Nat Genetics 2010 Nov... | 28 | Search for SNPs |
chr2 | 20,878,430 | 20,880,467 | RiceDiversity 44K SNP assay, 34 trait... | 28 | Search for SNPs |
chr2 | 20,878,430 | 20,880,467 | RiceDiversity 44K SNP assay, 34 trait... | 0 |