QTL Accession ID | AQAL010 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | DRTSHRO |
Trait Name | deep root to shoot ratio |
Published Symbol | |
Trait Synonym(s) | deep root ratio |
Trait Category | Abiotic stress |
Chromosome | 3 |
Comments | This QTL was detected based on data from the pot experiment in 1998. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 5,729,669-27,128,592 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | TTU IR58821/IR52561 QTL 2002 | BNL6.32 | 3 | 49.9-52.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAL010 | 3 | 49.9 | 52.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG191 | RFLP | Oryza sativa | qtl_marker |
To | C746 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000092) | Kamoshita-A et al., 2002 (IAGP) |
Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
(PO:0009006) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Kamoshita-A et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 5,729,669 | 27,128,592 | ~160K SNPs x 20 accessions (McNally 2... | 7,992 | Search for SNPs |
chr3 | 5,729,669 | 27,128,592 | '1536 chip' - 1311 SNPs x 395 rice ac... | 62 | Search for SNPs |
chr3 | 5,729,669 | 27,128,592 | Huang X, et al, Nat Genetics 2010 Nov... | 47,224 | Search for SNPs |
chr3 | 5,729,669 | 27,128,592 | RiceDiversity 44K SNP assay, 34 trait... | 47,224 | Search for SNPs |
chr3 | 5,729,669 | 27,128,592 | RiceDiversity 44K SNP assay, 34 trait... | 1,980 | Search for SNPs |