QTL Accession ID | AQAJ004 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | MALERF |
Trait Name | male fertility restoration |
Published Symbol | qRf-5 |
Trait Synonym(s) | Male fertility restoration in F1 hybrids |
Trait Category | Sterility or fertility |
Chromosome | 5 |
Comments | Each of recombinant inbred lines was crossed to Xieqingzao A, and the resulting F1s were used for phenotyping of the spikelet fertility. The main effect became significant only in the absence of qRf-10-2 (AQAJ003). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 28,696,887-28,851,537 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNRRI XeiB/Mil46 RI QTL 2002 | BNL6.32 | 5 | 184.4-186 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAJ004 | 5 | 184.4 | 186 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG119 | RFLP | Oryza sativa | qtl_marker |
To | RG474 | RFLP | Oryza sativa | qtl_marker |
To | RG493 | RFLP | Oryza sativa | qtl_marker |
To | RG346 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000308) | Xie-J-K et al., 2002 (IAGP) |
Plant Structure | (PO:0009066) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007016) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007151) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Xie-J-K et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 28,696,887 | 28,851,537 | ~160K SNPs x 20 accessions (McNally 2... | 107 | Search for SNPs |
chr5 | 28,696,887 | 28,851,537 | '1536 chip' - 1311 SNPs x 395 rice ac... | 2 | Search for SNPs |
chr5 | 28,696,887 | 28,851,537 | Huang X, et al, Nat Genetics 2010 Nov... | 278 | Search for SNPs |
chr5 | 28,696,887 | 28,851,537 | RiceDiversity 44K SNP assay, 34 trait... | 278 | Search for SNPs |
chr5 | 28,696,887 | 28,851,537 | RiceDiversity 44K SNP assay, 34 trait... | 14 | Search for SNPs |