QTL Accession ID | AQAI041 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | LFARSPKNBRO | ||||
Trait Name | leaf area to spikelet number ratio | ||||
Published Symbol | qTLTS4-1 | ||||
Trait Synonym(s) |
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Trait Category | Yield | ||||
Chromosome | 4 | ||||
Comments | Third leaf area to spikelet number ratio was measured to evaluate the relationship between source and sink, and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 30,334,770-31,471,486 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 4 | 107.9-124.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAI041 | 4 | 107.9 | 124.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G102 | RFLP | Oryza sativa | qtl_marker |
To | RM255 | SSR | Oryza sativa Indica Group | qtl_marker |
To | G235 | RFLP | Oryza sativa | qtl_marker |
To | RM241 | SSR | Oryza sativa Indica Group | qtl_marker |
To | R78 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000452) | Cui-H et al., 2003 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
(PO:0009051) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Cui-H et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 30,334,770 | 31,471,486 | ~160K SNPs x 20 accessions (McNally 2... | 494 | Search for SNPs |
chr4 | 30,334,770 | 31,471,486 | '1536 chip' - 1311 SNPs x 395 rice ac... | 7 | Search for SNPs |
chr4 | 30,334,770 | 31,471,486 | Huang X, et al, Nat Genetics 2010 Nov... | 2,666 | Search for SNPs |
chr4 | 30,334,770 | 31,471,486 | RiceDiversity 44K SNP assay, 34 trait... | 2,666 | Search for SNPs |
chr4 | 30,334,770 | 31,471,486 | RiceDiversity 44K SNP assay, 34 trait... | 144 | Search for SNPs |