Oryza sativa QTL "AQAI040" (leaf area to spikelet number ratio)

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Oryza sativa QTL "AQAI040" (leaf area to spikelet number ratio)

QTL Accession ID

AQAI040

Species

Oryza sativa (Rice) [ GR_tax:013681 ]

Trait Symbol

LFARSPKNBRO

Trait Name

leaf area to spikelet number ratio

Published Symbol

qTLTS2-1

Trait Synonym(s)

flag leaf area to spikelet number ratio	second leaf area to spikelet number ratio
third leaf area to spikelet number ratio

Trait Category

Yield

Chromosome

Comments

Third leaf area to spikelet number ratio was measured to evaluate the relationship between source and sink, and used for QTL analysis.

Map Positions (2)

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 2

17,040,590-17,043,505 bp

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Details

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Oryza sativa (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

QTL

CNHZAU Zh97/Ming63 RI QTL 2002

BNL6.32

85.6-87.5 cM

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Details

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QTL DB Map Position (1)

Name	Chromosome	Start	Stop
AQAI040	2	85.6	87.5

Associated Markers (4)

Direction	Name	Type	Species	Assoc. Type
To	RM29	SSR	Oryza sativa Indica Group	qtl_marker
To	R1843	RFLP	Oryza sativa	qtl_marker
To	RZ324	RFLP	Oryza sativa	qtl_marker
To	C777	RFLP	Oryza sativa	qtl_marker

Associated Genes (0)

Associated Ontologies (9)

Term Type	Term	Evidence
Trait Ontology	(TO:0000452)	Cui-H et al., 2003 (IAGP)
Plant Structure	(PO:0009025)	Gramene curators, 2007 (IC)
	(PO:0009051)	Gramene curators, 2007 (IC)
Plant Growth and Development Stage	(PO:0007130)	Gramene curators, 2007 (IC)
	(PO:0007134)	Gramene curators, 2007 (IC)
Growth Stage	(GRO:0007139)	Gramene curators, 2007 (IC)
	(GRO:0007140)	Gramene curators, 2007 (IC)
Environment	(EO:0007403)	Gramene curators, 2007 (IC)
Species Ontology	(GR_tax:013681)	Cui-H et al., 2003 (SM)

Database Cross-References (1)

Gramene Literature	Cui-H, Peng-B, Xing-Z, Yu-B, Xu-G, Zhang-Q, "Molecular dissection of the genetic relationships of source, sink and transport tissue with yield traits in rice", Theoretical and applied genetics, 2003, vol. 106, pp. 649-658

SNPs (8)

Chr	Start	Stop	Exp	Num. SNP Positions
chr2	17,040,590	17,043,505	~160K SNPs x 20 accessions (McNally 2...	1	Search for SNPs
chr2	17,040,590	17,043,505	'1536 chip' - 1311 SNPs x 395 rice ac...	0
chr2	17,040,590	17,043,505	Huang X, et al, Nat Genetics 2010 Nov...	3	Search for SNPs
chr2	17,040,590	17,043,505	RiceDiversity 44K SNP assay, 34 trait...	3	Search for SNPs
chr2	17,040,590	17,043,505	RiceDiversity 44K SNP assay, 34 trait...	1	Search for SNPs