QTL Accession ID | AQAI006 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | LFAR | ||||
Trait Name | leaf area | ||||
Published Symbol | qSL1-1 | ||||
Trait Synonym(s) |
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Trait Category | Anatomy | ||||
Chromosome | 1 | ||||
Comments | The second leaf area was measured as source capacity and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 13,902,370-15,008,871 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 1 | 99.2-101.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAI006 | 1 | 99.2 | 101.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C904 | RFLP | Oryza sativa | qtl_marker |
To | R2632 | RFLP | Oryza sativa | qtl_marker |
To | G1128 | RFLP | Oryza sativa | qtl_marker |
To | C39 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000540) | Cui-H et al., 2003 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Cui-H et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 13,902,370 | 15,008,871 | ~160K SNPs x 20 accessions (McNally 2... | 727 | Search for SNPs |
chr1 | 13,902,370 | 15,008,871 | '1536 chip' - 1311 SNPs x 395 rice ac... | 5 | Search for SNPs |
chr1 | 13,902,370 | 15,008,871 | Huang X, et al, Nat Genetics 2010 Nov... | 4,286 | Search for SNPs |
chr1 | 13,902,370 | 15,008,871 | RiceDiversity 44K SNP assay, 34 trait... | 4,286 | Search for SNPs |
chr1 | 13,902,370 | 15,008,871 | RiceDiversity 44K SNP assay, 34 trait... | 121 | Search for SNPs |