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Oryza sativa QTL "AQAG024" (grain number)
| QTL Accession ID | AQAG024 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | GRNB | ||||||
| Trait Name | grain number | ||||||
| Published Symbol | gp1b | ||||||
| Trait Synonym(s) |
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| Trait Category | Yield | ||||||
| Chromosome | 1 | ||||||
| Comments | The grain number per panicle (grains/panicle) of 1999 was measured and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 28,330,412-30,066,027 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 1 | 177.8-186 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAG024 | 1 | 177.8 | 186 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C922 | RFLP | Oryza sativa | qtl_marker |
| To | RG101 | RFLP | Oryza sativa | qtl_marker |
| To | RM237 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | G393 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000445) | Hua-J-P et al., 2002 (IAGP) |
| Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Hua-J-P et al., 2002 (SM) |
Database Cross-References (1)
SNPs (6,608)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 28,330,412 | 30,066,027 | ~160K SNPs x 20 accessions (McNally 2... | 1,388 | Search for SNPs |
| chr1 | 28,330,412 | 30,066,027 | '1536 chip' - 1311 SNPs x 395 rice ac... | 5 | Search for SNPs |
| chr1 | 28,330,412 | 30,066,027 | Huang X, et al, Nat Genetics 2010 Nov... | 2,481 | Search for SNPs |
| chr1 | 28,330,412 | 30,066,027 | RiceDiversity 44K SNP assay, 34 trait... | 2,481 | Search for SNPs |
| chr1 | 28,330,412 | 30,066,027 | RiceDiversity 44K SNP assay, 34 trait... | 253 | Search for SNPs |
